version 1.0
Shewanella pealeana ATCC 700345, complete genome - 1..5174581 4241 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1 42.78 0 223..1608 + 461 157959831 - Spea_0001 - chromosomal replication initiation protein 2 45.50 0 1628..2728 + 366 157959832 - Spea_0002 - DNA polymerase III, beta subunit 3 43.03 0 2849..3931 + 360 157959833 - Spea_0003 - DNA replication and repair protein RecF 4 44.80 0 3924..6365 + 813 157959834 - Spea_0004 - DNA gyrase, B subunit 5 44.60 0 6442..7506 + 354 157959835 - Spea_0005 - metal dependent phosphohydrolase 6 46.14 0 7582..9651 - 689 157959836 - Spea_0006 - glycyl-tRNA synthetase subunit beta 7 47.22 0 9663..10526 - 287 157959837 - Spea_0007 - glycyl-tRNA synthetase subunit alpha 8 41.00 -1 10686..11246 + 186 157959838 - Spea_0008 - DNA-3-methyladenine glycosylase I 9 39.19 -1 11265..11930 - 221 157959839 - Spea_0009 - hypothetical protein 10 45.77 0 12160..15360 - 1066 157959840 - Spea_0010 - amidohydrolase 11 42.47 0 15705..16142 - 145 157959841 - Spea_0011 - hypothetical protein 12 42.28 0 16177..16422 - 81 157959842 - Spea_0012 - SirA family protein 13 48.83 +1 16567..17037 - 156 157959843 - Spea_0013 - ybaK/ebsC protein 14 45.67 0 17096..17557 - 153 157959844 - Spea_0014 - GCN5-related N-acetyltransferase 15 39.71 -1 17680..18432 - 250 157959845 - Spea_0015 - integrase catalytic region 16 41.60 -1 18516..18914 - 132 157959846 - Spea_0016 - transposase 17 49.40 +1 19009..20172 - 387 157959847 - Spea_0017 - 3-ketoacyl-CoA thiolase 18 48.42 0 20191..22344 - 717 157959848 - Spea_0018 - multifunctional fatty acid oxidation complex subunit alpha 19 44.90 0 22709..24031 + 440 157959849 - Spea_0019 - proline dipeptidase 20 44.39 0 24050..24664 + 204 157959850 - Spea_0020 - hypothetical protein 21 47.81 0 24810..26267 + 485 157959851 - Spea_0021 - TrkH family potassium uptake protein 22 44.13 0 26409..26936 + 175 157959852 - Spea_0022 - protoporphyrinogen oxidase 23 41.60 -1 27037..27435 + 132 157959853 - Spea_0023 - transposase 24 39.71 -1 27519..28271 + 250 157959854 - Spea_0024 - integrase catalytic region 25 43.14 0 28334..28639 - 101 157959855 - Spea_0025 - ArsR family transcriptional regulator 26 45.19 0 28851..29390 + 179 157959856 - Spea_0026 - protoporphyrinogen oxidase 27 49.06 +1 29446..30888 - 480 157959857 - Spea_0027 - TrkH family potassium uptake protein 28 48.09 0 30910..32319 - 469 157959858 - Spea_0028 - potassium transporter peripheral membrane component 29 48.63 +1 32327..33607 - 426 157959859 - Spea_0029 - sun protein 30 49.07 +1 33614..34579 - 321 157959860 - Spea_0030 - methionyl-tRNA formyltransferase 31 43.67 0 34584..35183 - 199 157959861 - Spea_0031 - peptide deformylase 32 46.65 0 35245..36333 + 362 157959862 - Spea_0032 - peptidoglycan-binding LysM 33 46.76 0 36489..37508 + 339 157959863 - Spea_0033 - DNA protecting protein DprA 34 41.77 -1 37511..37984 + 157 157959864 - Spea_0034 - hypothetical protein 35 46.41 0 38252..39811 - 519 157959865 - Spea_0035 - collagenase 36 46.10 0 40012..40575 + 187 157959866 - Spea_0036 - DNA topoisomerase type IA Zn finger domain-containing protein 37 46.81 0 40662..41225 + 187 157959867 - Spea_0037 - SUA5/yciO/yrdC domain-containing protein 38 49.40 +1 41250..42164 + 304 157959868 - Spea_0038 - coproporphyrinogen III oxidase 39 44.60 0 42219..42653 - 144 157959869 - Spea_0039 - globin 40 45.96 0 42821..43636 + 271 157959870 - Spea_0040 - shikimate 5-dehydrogenase 41 40.14 -1 43660..43938 + 92 157959871 - Spea_0041 - hypothetical protein 42 47.13 0 43968..44525 - 185 157959872 - Spea_0042 - carbonic anhydrase 43 37.73 -2 57162..59639 - 825 157959873 - Spea_0043 - hypothetical protein 44 39.22 -1 59713..59967 - 84 157959874 - Spea_0044 - hypothetical protein 45 43.09 0 59964..61265 - 433 157959875 - Spea_0045 - hypothetical protein 46 39.00 -1 61701..62882 + 393 157959876 - Spea_0046 - polysaccharide biosynthesis protein CapD 47 44.10 0 62895..64055 + 386 157959877 - Spea_0047 - DegT/DnrJ/EryC1/StrS aminotransferase 48 40.63 -1 64064..65242 + 392 157959878 - Spea_0048 - UDP-N-acetylglucosamine 2-epimerase 49 42.74 0 65250..66323 + 357 157959879 - Spea_0049 - N-acylneuraminate-9-phosphate synthase 50 41.86 -1 66316..66960 + 214 157959880 - Spea_0050 - sialic acid biosynthesis protein NeuD 51 37.88 -2 66980..68035 + 351 157959881 - Spea_0051 - nucleotidyl transferase 52 38.67 -1 68035..68727 + 230 157959882 - Spea_0052 - acylneuraminate cytidylyltransferase 53 36.11 -2 68776..69063 - 95 157959883 - Spea_0053 - hypothetical protein 54 36.81 -2 69114..69545 - 143 157959884 - Spea_0054 - hypothetical protein 55 45.50 0 69530..70540 - 336 157959885 - Spea_0055 - OmpA/MotB domain-containing protein 56 45.10 0 70540..71397 - 285 157959886 - Spea_0056 - MotA/TolQ/ExbB proton channel 57 45.23 0 71412..72134 - 240 157959887 - Spea_0057 - flagellar biosynthesis sigma factor 58 41.23 -1 72146..72601 - 151 157959888 - Spea_0058 - flagellar basal body-associated protein FliL 59 48.76 +1 72616..73788 - 390 157959889 - Spea_0059 - flagellar hook-length control protein 60 45.06 0 73781..74104 - 107 157959890 - Spea_0060 - hypothetical protein 61 46.98 0 74073..74453 - 126 157959891 - Spea_0061 - flagellar protein FliS 62 46.23 0 74467..75885 - 472 157959892 - Spea_0062 - flagellar hook-associated 2 domain-containing protein 63 45.05 0 76202..77020 - 272 157959893 - Spea_0063 - flagellin domain-containing protein 64 44.86 0 77319..78350 - 343 157959894 - Spea_0064 - hypothetical protein 65 47.06 0 78369..79286 - 305 157959895 - Spea_0065 - flagellar hook-associated protein 3 66 45.78 0 79297..80670 - 457 157959896 - Spea_0066 - flagellar hook-associated protein FlgK 67 47.75 0 80721..81143 - 140 157959897 - Spea_0067 - peptidoglycan hydrolase 68 50.49 +1 81143..82273 - 376 157959898 - Spea_0068 - flagellar basal body P-ring protein 69 48.30 0 82311..82985 - 224 157959899 - Spea_0069 - flagellar basal body L-ring protein 70 49.11 +1 83033..83818 - 261 157959900 - Spea_0070 - flagellar basal-body rod protein FlgG 71 53.44 +2 83843..84568 - 241 157959901 - Spea_0071 - flagellar basal-body rod protein FlgF 72 48.88 +1 84587..85795 - 402 157959902 - Spea_0072 - flagellar hook protein FlgE 73 47.58 0 85819..86478 - 219 157959903 - Spea_0073 - flagellar hook capping protein 74 50.24 +1 86478..86897 - 139 157959904 - Spea_0074 - flagellar basal-body rod protein FlgC 75 46.15 0 86906..87256 - 116 157959905 - Spea_0075 - flagellar basal body rod protein FlgB 76 46.80 0 87320..88084 + 254 157959906 - Spea_0076 - SAF domain-containing protein 77 45.26 0 88187..88471 + 94 157959907 - Spea_0077 - hypothetical protein 78 46.62 0 88464..88922 + 152 157959908 - Spea_0078 - hypothetical protein 79 46.14 0 88938..89351 - 137 157959909 - Spea_0079 - hypothetical protein 80 51.57 +1 89366..90703 - 445 157959910 - Spea_0080 - FliI/YscN family ATPase 81 49.47 +1 90681..91436 - 251 157959911 - Spea_0081 - flagellar assembly protein H 82 48.32 0 91436..92449 - 337 157959912 - Spea_0082 - flagellar motor switch protein G 83 48.44 0 92510..94210 - 566 157959913 - Spea_0083 - flagellar MS-ring protein 84 46.02 0 94286..94624 - 112 157959914 - Spea_0084 - flagellar hook-basal body complex subunit FliE 85 48.55 +1 94655..95962 - 435 157959915 - Spea_0085 - sigma-54 dependent trancsriptional regulator 86 47.26 0 95949..96860 - 303 157959916 - Spea_0086 - OmpA/MotB domain-containing protein 87 45.69 0 97405..98286 + 293 157959917 - Spea_0087 - hypothetical protein 88 43.70 0 98279..98635 + 118 157959918 - Spea_0088 - flagellar motor switch protein FliN 89 45.82 0 98638..99366 + 242 157959919 - Spea_0089 - flagellar biosynthesis protein FliP 90 46.30 0 99553..99822 + 89 157959920 - Spea_0090 - flagellar biosynthetic protein FliQ 91 46.92 0 99901..100680 + 259 157959921 - Spea_0091 - flagellar biosynthetic protein FliR 92 46.95 0 100677..101807 + 376 157959922 - Spea_0092 - flagellar biosynthetic protein FlhB 93 49.86 +1 101823..103904 + 693 157959923 - Spea_0093 - flagellar biosynthesis protein FlhA 94 49.54 +1 103963..104937 - 324 157959924 - Spea_0094 - alpha/beta hydrolase fold 95 50.22 +1 105266..107065 - 599 157959925 - Spea_0095 - hypothetical protein 96 44.59 0 107416..108756 - 446 157959926 - Spea_0096 - coproporphyrinogen III oxidase 97 44.44 0 109044..109511 - 155 157959927 - Spea_0097 - hypothetical protein 98 42.27 0 109605..110141 - 178 157959928 - Spea_0098 - hypothetical protein 99 44.25 0 110195..110863 - 222 157959929 - Spea_0099 - hypothetical protein 100 44.28 0 111657..112277 - 206 157959930 - Spea_0100 - cytochrome c class I 45.18 MEAN 3.28 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.